Publications

Coughlan, Simone, Mulhair, Peter, Sanders, Mandy, Schonian, Gabriele, Cotton, James A., Downing, Tim (2017). The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania. Scientific Reports.

Waters, Elaine M., Rudkin, Justine K., Coughlan, Simone, Clair, Geremy C., Adkins, Joshua N., Gore, Suzanna, Xia, Guoqing, Black, Nikki S., Downing, Tim, O'Neill, Eoghan, Kadioglu, Aras, O'Gara, James P. (2017). Redeploying β-Lactam Antibiotics as a Novel Antivirulence Strategy for the Treatment of Methicillin-Resistant Staphylococcus Aureus Infections. Journal of Infectious Diseases.

Neville, B. Anne, Sheridan, Paul O., Harris, Hugh M. B., Coughlan, Simone, Flint, Harry J., Duncan, Sylvia H., Jeffery, Ian B., Claesson, Marcus J., Ross, R. Paul, Scott, Karen P., O'Toole, Paul W. (1970). Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans. PLoS ONE.

Gallagher, Laura A., Coughlan, Simone, Black, Nikki S., Lalor, Pierce, Waters, Elaine M., Wee, Bryan, Watson, Mick, Downing, Tim, Fitzgerald, J. Ross, Fleming, Gerard T. A., O'Gara, James P. (0001). Tandem Amplification of the Staphylococcal Cassette Chromosome mec Element Can Drive High-Level Methicillin Resistance in Methicillin-Resistant Staphylococcus aureus. Antimicrobial Agents and Chemotherapy.

Coughlan, Simone, Taylor, Ali Shirley, Feane, Eoghan, Sanders, Mandy, Schonian, Gabriele, Cotton, James A., Downing, Tim (0001). Leishmania naiffi and Leishmania guyanensis reference genomes highlight genome structure and gene evolution in the Viannia subgenus. Royal Society Open Science.

Jeffery, Ian B., Das, Anubhav, O’Herlihy, Eileen, Coughlan, Simone, Cisek, Katryna, Moore, Michael, Bradley, Fintan, Carty, Tom, Pradhan, Meenakshi, Dwibedi, Chinmay, Shanahan, Fergus, O’Toole, Paul W. (0001). Differences in Fecal Microbiomes and Metabolomes of People With vs Without Irritable Bowel Syndrome and Bile Acid Malabsorption.

Kamvar, Zhian N., López-Uribe, Margarita M., Coughlan, Simone, Grünwald, Niklaus J., Lapp, Hilmar, Manel, Stéphanie (0001). Developing educational resources for population genetics in R: an open and collaborative approach. Molecular Ecology Resources.